PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03113.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 892aa    MW: 98752.6 Da    PI: 6.4109
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03113.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-24129230199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+
  Rsa1.0_03113.1_g00003.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 212
                              99*****************************96555555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              v+F   ++++ +l+++++r+
  Rsa1.0_03113.1_g00003.1 213 VLFI--WNDKNQLLLGIRRA 230
                              ****..7888889****997 PP

2Auxin_resp116.62.2e-38255338183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+t+s F+++YnPra++seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k
  Rsa1.0_03113.1_g00003.1 255 AAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWANSHWRSVK 338
                              79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41123244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-20128229No hitNo description
PROSITE profilePS5086312.435129231IPR003340B3 DNA binding domain
PfamPF023627.7E-22129230IPR003340B3 DNA binding domain
SMARTSM010192.3E-24129231IPR003340B3 DNA binding domain
PfamPF065072.3E-33255338IPR010525Auxin response factor
PfamPF023091.7E-7561841IPR033389AUX/IAA domain
SuperFamilySSF542773.86E-7746827No hitNo description
PROSITE profilePS5174524752836IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MRLSSAGFDT HPHEVTGEER VLNSELWHAC AGPLVSLPPL GSRVVYFPQG HSEQVAASTN  60
KEVDAHTPNY PSLQPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV  120
PNRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELM ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRACPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP PPGLPSFHGL REDDLGMGMG MSMSSPLMWD RGLQSMNFQG  420
MGVNPWMQQR LDASGLLGVQ NDVYQAMAVA AYQDMRGIDP AKAAASLLQF QSPSGFSMQS  480
PSLVQPQLLL QQLSQQQQQQ QHQAYLPETH QPQSQAQSQP NNILSQQQQQ VVDNHNQFSS  540
SPTTATRAMS QFGSASQSNT SLLQSMTSLC HQQIFSDTNG GNNPITPLHT LLSNFPQDES  600
SQLLNLTRTN SAMTSSGWPS KRQAVDSSFQ HSGAGNNNNN QSVMEQLGQT HTSNVPPNII  660
SLPPFPSGRE CVQEENPSDP HSHLLFGVNI DSSSPLMPNG MSNLRSIGIE GTLPFTSSTF  720
NNEFSGNLAM TTPSSCIDEQ GSLQSSENQQ SNTFVKVYKS GSFGRSLDIK KFSSYNELRS  780
ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK ILSPQEVQQM  840
GKRGLELLNS APPSSNNVDK LPSNGNCDDF GNRSDPRSLG NGIASVGGSF NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592135950388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794680.0JN979468.1 Brassica rapa subsp. pekinensis auxin response factor 6 (ARF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478419.10.0PREDICTED: auxin response factor 6 isoform X3
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLV4L2540.0V4L254_EUTSA; Auxin response factor
STRINGAT1G30330.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6